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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18840606_18841595_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18840606 - 18841595
Intron Length:
990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTATCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CCTCTTTTATCC
Flanking Amino Acid:
AHFGGKILKKIPVENTQTQG
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.2
0.75
0.8
76.7
36.5
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
50.6
-0
1.6
58.41
41.2

Associated Gene:

Gene:
PHRF1
Ensembl Gene ID:
ENSAPLG00000012427
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012959
18820328 - 18845341
25014