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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18841680_18842585_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18841680 - 18842585
Intron Length:
906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTATGGGAAAA
Flanking Amino Acid:
CLDCIVEWSKNANSCPVDRI
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
82
0.72
0.8
74.3
36.5
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
36.3
-1
2.5
50.63
40.3

Associated Gene:

Gene:
PHRF1
Ensembl Gene ID:
ENSAPLG00000012427
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012959
18820328 - 18845341
25014