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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18842804_18844245_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18842804 - 18844245
Intron Length:
1442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCACTTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTTTTCTCACTT
Flanking Amino Acid:
KEESEDEELEDCEDDDEEEE
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
71
0.47
1
74.5
33.9
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
55
0.24
1.8
75.15
42.4

Associated Gene:

Gene:
PHRF1
Ensembl Gene ID:
ENSAPLG00000012427
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012959
18820328 - 18845341
25014