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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18844366_18844677_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18844366 - 18844677
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGTTTCATATCC
Flanking Amino Acid:
RQSLALLSETESNGGNSCES
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1.1
69.7
41.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
89.6
0.89
0.6
89.5
19.2
Minor 5ss
38.5
-1.3
3.1
50.4
46
Minor BPS
56
0.17
1.9
71.85
39

Associated Gene:

Gene:
PHRF1
Ensembl Gene ID:
ENSAPLG00000012427
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012959
18820328 - 18845341
25014