Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18894079_18896128_R

Intron Information:

Intron Rank:

138231

Intron Class:

major

Intron Phase:

Intron Coordinates:

18894079 - 18896128

Intron Length:

2050

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTGGGA

5'SS Class:

major

3'SS Sequence:

TGCCATGTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGGTAAA

U12 Branch Point Sequence:

AGCTGGTAAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.1

0.47

1.1

58.6

40.4

Major BPS

60.1

0.25

1.3

61.7

43.1

Major PPT

72.7

0.51

68.7

41.7

Minor 5ss

34.7

-1.7

3.5

47.2

48.2

Minor BPS

-0.6

2.5

58.15

45.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021901

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026035

18891744 - 18897160

5417