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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1896040_1897874_R

Intron Information:

Intron Rank:
24
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1896040 - 1897874
Intron Length:
1835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATTTTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTTTGTTATTT
Flanking Amino Acid:
TLADQRRAAHESKMIEKHGG
Intron Amino Acid Position:
1007

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
75.1
35.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
58.6
0.29
2.3
72.8
39
Minor BPS
56.6
0.28
2.2
82.89
39.2

Associated Gene:

Gene:
IPO7
Ensembl Gene ID:
ENSAPLG00000016161
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016896
1895942 - 1935877
39936