Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1897992_1898374_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1897992 - 1898374

Intron Length:

383

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTAAC

5'SS Class:

major

3'SS Sequence:

CTTTCTCTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

TTTTGTTTACAT

Flanking Amino Acid:

EYQIFKTIFQTIQNRNPVWY

Intron Amino Acid Position:

968

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.5

0.65

75.1

35.1

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

89.5

0.89

0.6

84.5

23.2

Minor 5ss

37.3

-1.4

2.7

42.3

38.4

Minor BPS

54.7

0.23

2.1

80.63

41.5

Associated Gene:

Gene:

IPO7

Ensembl Gene ID:

ENSAPLG00000016161

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016896

1895942 - 1935877

39936