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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1899587_1900560_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1899587 - 1900560
Intron Length:
974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTAAC
5'SS Class:
major
3'SS Sequence:
TCTCACTCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATTACTA
Flanking Amino Acid:
LQCKGRGIDQCIPLFVEAAL
Intron Amino Acid Position:
757

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
73.5
37.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
76.2
0.59
0.8
73.2
31.3
Minor 5ss
31
-2.2
2.8
36.5
40.6
Minor BPS
49.7
-0
2.2
72.1
40.4

Associated Gene:

Gene:
IPO7
Ensembl Gene ID:
ENSAPLG00000016161
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016896
1895942 - 1935877
39936