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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_19005994_19007413_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19005994 - 19007413
Intron Length:
1420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGA
5'SS Class:
major
3'SS Sequence:
GTGTTTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCAAA
U12 Branch Point Sequence:
GCTGCTACAAGC
Flanking Amino Acid:
YIETSAKTRQGVEDAFYTLV
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.1
40.1
Major BPS
55.1
0.13
1.3
64.9
38.5
Major PPT
79.9
0.67
0.9
74
36.8
Minor 5ss
28.4
-2.5
3.5
38.3
46.7
Minor BPS
40.6
-0.7
2
47.68
42.1

Associated Gene:

Gene:
HRAS
Ensembl Gene ID:
ENSAPLG00000012248
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012756
18999555 - 19010287
10733