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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_19016127_19016217_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19016127 - 19016217
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGCC
5'SS Class:
strong_major
3'SS Sequence:
GTCTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTCACAAACG
Flanking Amino Acid:
SKDAIKKKFTGIKHEWQVNG
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.8
38
Major BPS
85
0.87
0.8
85.6
23
Major PPT
80.4
0.68
0.9
76.9
37.4
Minor 5ss
36.6
-1.5
3.5
50.4
46.4
Minor BPS
46.7
-0.3
2.3
61.19
46.2

Associated Gene:

Gene:
CFL2
Ensembl Gene ID:
ENSAPLG00000025574
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035877
19015678 - 19016330
653