Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1902950_1903025_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1902950 - 1903025

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTATGTGTA

5'SS Class:

strong_major

3'SS Sequence:

CTGTTTGTTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTAAAT

U12 Branch Point Sequence:

TTGGCCTTAAAT

Flanking Amino Acid:

IGTVLQQHVLEFYEEIFSLA

Intron Amino Acid Position:

650

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.2

28.6

Major BPS

0.5

1.1

76.9

32.8

Major PPT

78.2

0.64

0.9

76.9

37.3

Minor 5ss

42.4

-0.8

3.1

57.6

47.1

Minor BPS

73.2

0.81

1.5

85.18

41.2

Associated Gene:

Gene:

IPO7

Ensembl Gene ID:

ENSAPLG00000016161

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016896

1895942 - 1935877

39936