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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1903093_1904621_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1903093 - 1904621
Intron Length:
1529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TATCTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AAGTCTTGAAAA
Flanking Amino Acid:
LLSVVEDHKEITQQLEGICL
Intron Amino Acid Position:
628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
85.9
0.81
0.7
85.1
29.3
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
54.6
0.14
1.5
61.39
38.1

Associated Gene:

Gene:
IPO7
Ensembl Gene ID:
ENSAPLG00000016161
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016896
1895942 - 1935877
39936