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Intron Name: Anas_platyrhynchos_platyrhynchos_5_19039232_19043625_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19039232 - 19043625

Intron Length:

4394

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAGGATTT

5'SS Class:

major

3'SS Sequence:

TTTCTTTGTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTAATTT

Flanking Amino Acid:

YKAIFGCVHLLRAINVDLQT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.5

0.62

74.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

84.1

0.77

0.8

84.8

Minor 5ss

42.6

-0.8

3.5

61.2

44.7

Minor BPS

55.2

0.24

1.9

78.46

Associated Gene:

Gene:

SNX6

Ensembl Gene ID:

ENSAPLG00000011961

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029633

19038645 - 19062820

24176