Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_19046325_19047321_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

5UTR

Intron Coordinates:

19046325 - 19047321

Intron Length:

997

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGC|GTATGTAGA

5'SS Class:

weak_major

3'SS Sequence:

GTGGTCTGGTTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGATCAT

U12 Branch Point Sequence:

TGATCATGATTC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

61.8

0.28

1.4

61.5

44.7

Major BPS

0.57

1.2

41.2

Major PPT

55.1

0.11

1.1

54.6

45.8

Minor 5ss

42.1

-0.9

2.5

45.9

42.7

Minor BPS

46.5

-0.2

1.9

58.59

39.8

Associated Gene:

Gene:

SNX6

Ensembl Gene ID:

ENSAPLG00000011961

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012478

19044550 - 19062178

17629