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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_19046325_19048302_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
19046325 - 19048302
Intron Length:
1978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTATGTAGA
5'SS Class:
weak_major
3'SS Sequence:
TTCTTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
AAATTCTTATGT
Flanking Amino Acid:
EFTKMKQELEAEYLAIFKKT
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.8
0.28
1.4
61.5
44.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
42.1
-0.9
2.5
45.9
42.7
Minor BPS
51.1
0.11
1.9
68.02
42.6

Associated Gene:

Gene:
SNX6
Ensembl Gene ID:
ENSAPLG00000011961
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029633
19038645 - 19062820
24176