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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_19047461_19048302_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19047461 - 19048302
Intron Length:
842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
AAATTCTTATGT
Flanking Amino Acid:
HLPTLALLVCCEYLAIFKKT
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
77.7
31.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
41.3
-1
2.5
47.2
43.7
Minor BPS
51.1
0.11
1.9
68.02
42.6

Associated Gene:

Gene:
SNX6
Ensembl Gene ID:
ENSAPLG00000011961
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012478
19044550 - 19062178
17629