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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1904751_1907350_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1904751 - 1907350
Intron Length:
2600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TTATTACGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTCGTTTTATT
Flanking Amino Acid:
PIAVEMTQHLAMTFNQVIQT
Intron Amino Acid Position:
585

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.8
39.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
75.7
0.58
1
70.6
39.9
Minor 5ss
34.7
-1.7
3.2
46.8
42.3
Minor BPS
51.4
0.13
2
76.99
39.9

Associated Gene:

Gene:
IPO7
Ensembl Gene ID:
ENSAPLG00000016161
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016896
1895942 - 1935877
39936