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Intron Name: Anas_platyrhynchos_platyrhynchos_5_19048427_19049624_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19048427 - 19049624

Intron Length:

1198

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTGAGTATT

5'SS Class:

strong_major

3'SS Sequence:

ATTTGTTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATCAA

U12 Branch Point Sequence:

GATATATCAATT

Flanking Amino Acid:

FHVFLEYNQDLSVRGKNKKE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

24.3

Major BPS

70.2

0.5

72.1

Major PPT

87.6

0.84

0.8

85.1

34.9

Minor 5ss

38.7

-1.3

41.5

Minor BPS

47.4

-0.1

1.8

64.3

39.6

Associated Gene:

Gene:

SNX6

Ensembl Gene ID:

ENSAPLG00000011961

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029633

19038645 - 19062820

24176

ENSAPLT00000012478

19044550 - 19062178

17629