Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_19051108_19052422_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19051108 - 19052422

Intron Length:

1315

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTCTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTCAA

U12 Branch Point Sequence:

TCAATGGTAAAA

Flanking Amino Acid:

KSDKMTRSHKNVADDYNRIG

Intron Amino Acid Position:

129

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

80.3

27.7

Major BPS

0.82

0.8

83.9

25.3

Major PPT

0.92

0.6

85.6

29.2

Minor 5ss

39.1

-1.2

2.9

50.9

39.6

Minor BPS

38.6

-0.8

2.5

49.32

41.5

Associated Gene:

Gene:

SNX6

Ensembl Gene ID:

ENSAPLG00000011961

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029633

19038645 - 19062820

24176

ENSAPLT00000012478

19044550 - 19062178

17629