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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1910407_1911638_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1910407 - 1911638
Intron Length:
1232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTACTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
GTTTACTTAACA
Flanking Amino Acid:
DPYEYIRMKFDVFEDFISPT
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
82.4
29.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
75.4
0.57
1
70
40
Minor 5ss
34.1
-1.8
3.2
46.4
43
Minor BPS
79.6
0.92
1.4
85.7
32.8

Associated Gene:

Gene:
IPO7
Ensembl Gene ID:
ENSAPLG00000016161
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016896
1895942 - 1935877
39936