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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1915368_1915470_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1915368 - 1915470
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCAAATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTTGCTTCAAAT
Flanking Amino Acid:
ALHILARLFERYGSPGNVSK
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
77.3
0.68
1
81.5
27
Major PPT
69.3
0.43
0.9
59.7
40.4
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
61.3
0.43
1.8
81.38
40.3

Associated Gene:

Gene:
IPO7
Ensembl Gene ID:
ENSAPLG00000016161
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016896
1895942 - 1935877
39936