Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1915566_1915973_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1915566 - 1915973

Intron Length:

408

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTGGC

5'SS Class:

major

3'SS Sequence:

TTTTCCCCTAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

TTTCCCCTAAAG

Flanking Amino Acid:

KTVVDRDVPAETLQVDEDDR

Intron Amino Acid Position:

243

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.54

1.1

63.9

Major BPS

71.2

0.53

70.3

31.9

Major PPT

75.7

0.58

75.9

26.8

Minor 5ss

35.9

-1.6

3.3

53.5

43.7

Minor BPS

60.5

0.19

1.9

71.58

40.5

Associated Gene:

Gene:

IPO7

Ensembl Gene ID:

ENSAPLG00000016161

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016896

1895942 - 1935877

39936