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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1922435_1935793_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1922435 - 1935793
Intron Length:
13359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGCG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AATTTCTTAACT
Flanking Amino Acid:
REAAERQLNEAHKSVNFVST
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
40.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
82.9
0.74
0.8
76.9
31.9
Minor 5ss
31.2
-2.1
3.2
38.5
46.7
Minor BPS
84.7
1.17
0.9
91.52
30.6

Associated Gene:

Gene:
IPO7
Ensembl Gene ID:
ENSAPLG00000016161
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016896
1895942 - 1935877
39936