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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_19266790_19279254_F

Intron Information:

Intron Rank:
123871
Intron Class:
major
Intron Phase:
Intron Coordinates:
19266790 - 19279254
Intron Length:
12465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTCAT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
GTGTGCTGAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.3
70.6
41.3
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
93.4
0.98
0.7
92.3
26.6
Minor 5ss
37.4
-1.4
2.8
50
46.3
Minor BPS
49.5
-0.1
2
56.85
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016779
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026712
19266527 - 19288360
21834