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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_19304406_19304645_F

Intron Information:

Intron Rank:
145975
Intron Class:
major
Intron Phase:
Intron Coordinates:
19304406 - 19304645
Intron Length:
240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCTC
5'SS Class:
major
3'SS Sequence:
CTTTGCCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TTTCAAACAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
38.9
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
80
0.68
0.8
77
31.7
Minor 5ss
33.9
-1.8
3.7
49.6
47
Minor BPS
39.9
-0.6
2.3
65.6
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028664
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037399
19294684 - 19306680
11997
ENSAPLT00000031923
19294684 - 19306680
11997
ENSAPLT00000046521
19300426 - 19306680
6255
ENSAPLT00000022896
19289383 - 19306680
17298
ENSAPLT00000043665
19288001 - 19306680
18680
ENSAPLT00000043326
19296627 - 19306680
10054