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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_19304406_19305971_F

Intron Information:

Intron Rank:
145985
Intron Class:
major
Intron Phase:
Intron Coordinates:
19304406 - 19305971
Intron Length:
1566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCTC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
CAATTTTCAGCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
38.9
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
33.9
-1.8
3.7
49.6
47
Minor BPS
46.1
-0.3
1.7
52.04
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028664
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034767
19294684 - 19306680
11997