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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_19313575_19333458_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19313575 - 19333458
Intron Length:
19884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTATCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TATTTCTTACAA
Flanking Amino Acid:
GKYYVKERSKAMVACYPGNG
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
87.5
0.84
0.7
84.9
29.5
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
62.4
0.39
1.7
73.45
38.1

Associated Gene:

Gene:
EGLN3
Ensembl Gene ID:
ENSAPLG00000020625
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028438
19312595 - 19339384
26790