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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_19333579_19335489_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19333579 - 19335489
Intron Length:
1911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TATAAAGTAACC
Flanking Amino Acid:
YYLNKNWDSKLHGGILRIFP
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
86.6
0.82
0.7
84.2
23.8
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
45
-0.4
2.3
63.04
41.5

Associated Gene:

Gene:
EGLN3
Ensembl Gene ID:
ENSAPLG00000020625
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028438
19312595 - 19339384
26790