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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_19335627_19336310_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19335627 - 19336310
Intron Length:
684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
TTTTCTTTTACA
Flanking Amino Acid:
PHEVQPSYATRYAMTVWYFD
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1.1
81.8
38.5
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
95.6
1.03
0.5
91.4
20.1
Minor 5ss
43
-0.8
2.7
60.7
43.6
Minor BPS
77.6
0.86
1.5
87.29
30.4

Associated Gene:

Gene:
EGLN3
Ensembl Gene ID:
ENSAPLG00000020625
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028438
19312595 - 19339384
26790