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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_19336385_19337726_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19336385 - 19337726
Intron Length:
1342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGACTC
5'SS Class:
major
3'SS Sequence:
CTTTTTGATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATCT
Flanking Amino Acid:
EAKKKFRNLTDARKREAALN
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
64.3
40
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.1
0.61
0.9
73.7
35.9
Minor 5ss
42.8
-0.8
3.1
56.8
42
Minor BPS
74.5
0.85
1.5
91.05
32.7

Associated Gene:

Gene:
EGLN3
Ensembl Gene ID:
ENSAPLG00000020625
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028438
19312595 - 19339384
26790