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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_19371503_19374703_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19371503 - 19374703
Intron Length:
3201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
AATCATTCAATT
Flanking Amino Acid:
KNIIWVNYLLSNPEYKDTPM
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
83.2
0.75
0.8
80.8
31.3
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
49.2
0.02
1.7
66.69
37.7

Associated Gene:

Gene:
NPAS3
Ensembl Gene ID:
ENSAPLG00000015085
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030345
19367243 - 19936713
569471
ENSAPLT00000025088
19367243 - 19869513
502271
ENSAPLT00000015713
19367243 - 19834142
466900