Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_19374852_19389573_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19374852 - 19389573

Intron Length:

14722

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAAGTACT

5'SS Class:

major

3'SS Sequence:

TATTTTCCGTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGTAT

U12 Branch Point Sequence:

TTGTTTGTATTT

Flanking Amino Acid:

VEGIRHSHLDLLNKGQCVTK

Intron Amino Acid Position:

283

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

1.1

77.8

36.6

Major BPS

71.5

0.53

1.4

71.7

44.6

Major PPT

78.1

0.63

78.2

Minor 5ss

41.3

-1

2.8

62.9

Minor BPS

47.5

-0.1

2.2

70.24

42.1

Associated Gene:

Gene:

NPAS3

Ensembl Gene ID:

ENSAPLG00000015085

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030345

19367243 - 19936713

569471

ENSAPLT00000025088

19367243 - 19869513

502271

ENSAPLT00000015713

19367243 - 19834142

466900