About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_19395989_19423547_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19395989 - 19423547
Intron Length:
27559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTCTTTTACT
Flanking Amino Acid:
GVHIKSSGYKVIHITGRLRL
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92
0.95
0.7
84.8
35.4
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
74.6
0.85
1.5
88.94
35.5

Associated Gene:

Gene:
NPAS3
Ensembl Gene ID:
ENSAPLG00000015085
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025088
19367243 - 19869513
502271
ENSAPLT00000015713
19367243 - 19834142
466900
ENSAPLT00000030345
19367243 - 19936713
569471