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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_19423667_19465989_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19423667 - 19465989
Intron Length:
42323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTCCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TTTTTTCTATTC
Flanking Amino Acid:
SSSQSETPEPVESTSPSLLT
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
80.6
33.8
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
76.3
0.59
0.8
69.7
36.4
Minor 5ss
32.6
-2
3.4
48
47.7
Minor BPS
51.7
0.03
1.9
70.01
36

Associated Gene:

Gene:
NPAS3
Ensembl Gene ID:
ENSAPLG00000015085
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025088
19367243 - 19869513
502271
ENSAPLT00000015713
19367243 - 19834142
466900
ENSAPLT00000030345
19367243 - 19936713
569471