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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_19466165_19549865_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19466165 - 19549865
Intron Length:
83701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCACAT
U12 Branch Point Sequence:
GATTGCACATTT
Flanking Amino Acid:
TVSIYLGLSQVELTGSSVFD
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
62.5
0.31
1.2
69
38.9
Major PPT
80.8
0.69
0.8
74.3
30.8
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
40.3
-0.6
2.2
59.35
43.7

Associated Gene:

Gene:
NPAS3
Ensembl Gene ID:
ENSAPLG00000015085
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030345
19367243 - 19936713
569471
ENSAPLT00000025088
19367243 - 19869513
502271
ENSAPLT00000015713
19367243 - 19834142
466900