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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_194786_200823_F

Intron Information:

Intron Rank:
143698
Intron Class:
major
Intron Phase:
Intron Coordinates:
194786 - 200823
Intron Length:
6038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GCATCATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTGCATCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
75.8
35.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74
0.54
0.9
69.8
40.3
Minor 5ss
35.7
-1.6
2.6
42.3
44.5
Minor BPS
47.6
-0.1
2.1
73.31
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027432
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045072
194779 - 222582
27804