Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_19549956_19671059_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19549956 - 19671059

Intron Length:

121104

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAAAA

5'SS Class:

strong_major

3'SS Sequence:

TCTTCCTCTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTAATTATCT

Flanking Amino Acid:

ESHLGSHILQSLDGFVFALN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

79.3

28.7

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

86.2

0.81

0.7

24.1

Minor 5ss

32.1

-2

39.7

45.8

Minor BPS

60.4

0.41

86.58

38.7

Associated Gene:

Gene:

NPAS3

Ensembl Gene ID:

ENSAPLG00000015085

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030345

19367243 - 19936713

569471

ENSAPLT00000025088

19367243 - 19869513

502271

ENSAPLT00000015713

19367243 - 19834142

466900