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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1963921_1964746_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1963921 - 1964746
Intron Length:
826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGCGGGG
5'SS Class:
weak_major
3'SS Sequence:
GTATTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTGTTAATT
Flanking Amino Acid:
SARQQRQLLEGKAQAEGGSA
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.2
0.22
1.2
45.7
44.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81
0.7
0.9
78.2
39.7
Minor 5ss
27.3
-2.6
3.7
37.3
47.4
Minor BPS
71
0.74
2
91.07
32.9

Associated Gene:

Gene:
TMEM41B
Ensembl Gene ID:
ENSAPLG00000002287
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002383
1963836 - 1971772
7937