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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1964865_1966003_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1964865 - 1966003
Intron Length:
1139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTGTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
CATCTCCTACCA
Flanking Amino Acid:
LVYKNFPQLSEEEGKCIKVP
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.5
40.6
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
92.9
0.97
0.7
92.3
26.6
Minor 5ss
40.6
-1
2.8
48.1
41.6
Minor BPS
46.5
-0.2
1.9
58.23
41.1

Associated Gene:

Gene:
TMEM41B
Ensembl Gene ID:
ENSAPLG00000002287
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002383
1963836 - 1971772
7937