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Intron Name: Anas_platyrhynchos_platyrhynchos_5_19671143_19790453_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19671143 - 19790453

Intron Length:

119311

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGCTGT

5'SS Class:

strong_major

3'SS Sequence:

GTTTTTTATTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TGTTTTTTATTC

Flanking Amino Acid:

EGPPPNTSVKVIGAQRRRSP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

71.4

41.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

86.3

0.82

0.8

85.4

34.3

Minor 5ss

55.9

0.2

2.5

73.6

Minor BPS

61.4

0.34

1.5

70.06

35.9

Associated Gene:

Gene:

NPAS3

Ensembl Gene ID:

ENSAPLG00000015085

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030345

19367243 - 19936713

569471

ENSAPLT00000015713

19367243 - 19834142

466900