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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1967712_1968543_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1967712 - 1968543
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TAATTAGTGATT
Flanking Amino Acid:
FPLALFLVCLCSGLGASFCY
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
45
-0.3
2.2
64.97
39.7

Associated Gene:

Gene:
TMEM41B
Ensembl Gene ID:
ENSAPLG00000002287
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002383
1963836 - 1971772
7937