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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1968649_1970661_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1968649 - 1970661
Intron Length:
2013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTGCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTACTGATTT
Flanking Amino Acid:
TEKAVKWSEQVERHREHLIN
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
82.7
0.74
0.8
79.4
32.6
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
57.9
0.32
1.9
82.09
39.3

Associated Gene:

Gene:
TMEM41B
Ensembl Gene ID:
ENSAPLG00000002287
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002383
1963836 - 1971772
7937