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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1970801_1971602_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1970801 - 1971602
Intron Length:
802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CTACCCTTATAC
Flanking Amino Acid:
LKVFFIGTFLGVAPPSFVAI
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
78.9
0.65
0.7
69.8
31
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
52.7
0.06
1.8
62.26
42.6

Associated Gene:

Gene:
TMEM41B
Ensembl Gene ID:
ENSAPLG00000002287
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002383
1963836 - 1971772
7937