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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_19790699_19868764_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
19790699 - 19868764
Intron Length:
78066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTATTTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
CTTTGTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74
36.3
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
90.1
0.9
0.7
89.2
27.5
Minor 5ss
38.9
-1.2
2.7
53.8
42.8
Minor BPS
53.5
0.19
2
74.81
43.2

Associated Gene:

Gene:
NPAS3
Ensembl Gene ID:
ENSAPLG00000015085
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025088
19367243 - 19869513
502271