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Intron Name: Anas_platyrhynchos_platyrhynchos_5_19907825_19936690_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

19907825 - 19936690

Intron Length:

28866

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGTCAC

5'SS Class:

strong_major

3'SS Sequence:

CTTTATGTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTTAT

U12 Branch Point Sequence:

TTTCCCTTTATG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.6

1.05

0.7

81.4

32.7

Major BPS

71.5

0.54

1.1

63.3

42.8

Major PPT

0.61

0.9

68.8

41.7

Minor 5ss

34.5

-1.8

2.9

43.8

43.9

Minor BPS

66.7

0.38

1.7

73.22

39.2

Associated Gene:

Gene:

NPAS3

Ensembl Gene ID:

ENSAPLG00000015085

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030345

19367243 - 19936713

569471