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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20036462_20056329_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20036462 - 20056329
Intron Length:
19868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAAAT
Flanking Amino Acid:
RLQKRLEKDSESLNVIDASL
Intron Amino Acid Position:
1150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.8
32
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
92
0.94
0.7
87.7
29.5
Minor 5ss
29.4
-2.4
3.2
40.8
45.4
Minor BPS
73.7
0.82
1.3
85.63
34

Associated Gene:

Gene:
AKAP6
Ensembl Gene ID:
ENSAPLG00000015214
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018363
20030437 - 20245427
214991
ENSAPLT00000039319
20033004 - 20310614
277611
ENSAPLT00000015858
20030437 - 20245427
214991
ENSAPLT00000023757
20033045 - 20310614
277570
ENSAPLT00000019462
20033004 - 20326240
293237
ENSAPLT00000018403
20033004 - 20247967
214964
ENSAPLT00000039623
20033004 - 20314761
281758