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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20073901_20077342_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20073901 - 20077342
Intron Length:
3442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATTTGCA
5'SS Class:
major
3'SS Sequence:
TCTGATGCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATCT
Flanking Amino Acid:
SINEKWELLGKTLGEKIQDT
Intron Amino Acid Position:
1003

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.1
60.5
38.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
61.3
0.26
1
59.6
41.4
Minor 5ss
38.7
-1.3
3
41.6
44.9
Minor BPS
80.3
1.03
1.4
95.73
30.7

Associated Gene:

Gene:
AKAP6
Ensembl Gene ID:
ENSAPLG00000015214
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018403
20033004 - 20247967
214964
ENSAPLT00000039623
20033004 - 20314761
281758
ENSAPLT00000018363
20030437 - 20245427
214991
ENSAPLT00000039319
20033004 - 20310614
277611
ENSAPLT00000015858
20030437 - 20245427
214991
ENSAPLT00000023757
20033045 - 20310614
277570
ENSAPLT00000019462
20033004 - 20326240
293237