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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2015074_2018938_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2015074 - 2018938
Intron Length:
3865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTACATAAT
5'SS Class:
weak_major
3'SS Sequence:
TGTAATTATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTACTTTACT
Flanking Amino Acid:
KVIQRTYLFSCLLPDETEGN
Intron Amino Acid Position:
759

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.1
66.2
38.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
71.8
0.49
1
62.6
47.2
Minor 5ss
38.3
-1.3
3.2
55.9
43
Minor BPS
73.7
0.83
1.8
93.69
33.8

Associated Gene:

Gene:
DENND5A
Ensembl Gene ID:
ENSAPLG00000002386
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002450
1972822 - 2019189
46368