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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20245428_20247831_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
20245428 - 20247831
Intron Length:
2404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCAGG
5'SS Class:
major
3'SS Sequence:
TTTATCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.3
63.6
48.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.8
0.83
0.7
81.6
30.3
Minor 5ss
34.2
-1.8
2.7
40.7
45.2
Minor BPS
67.7
0.63
1.6
82.72
39.3

Associated Gene:

Gene:
AKAP6
Ensembl Gene ID:
ENSAPLG00000015214
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018403
20033004 - 20247967
214964