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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20371413_20372417_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20371413 - 20372417
Intron Length:
1005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTTTCTAAATG
Flanking Amino Acid:
SLHQELLETSKILDRTERLH
Intron Amino Acid Position:
1362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
85.1
0.79
0.7
80.9
31.3
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
61.7
0.23
1.7
66.07
42.7

Associated Gene:

Gene:
ARHGAP5
Ensembl Gene ID:
ENSAPLG00000015365
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016014
20364795 - 20405362
40568